Replacing suffix trees with enhanced suffix arrays, Journal of Discrete Algorithms, vol.2, issue.1, pp.53-86, 2004. ,
DOI : 10.1016/S1570-8667(03)00065-0
URL : https://doi.org/10.1016/s1570-8667(03)00065-0
Optimal Exact String Matching Based on Suffix Arrays, Lecture Notes in Computer Science, vol.2476, pp.31-43, 2002. ,
DOI : 10.1007/3-540-45735-6_4
URL : http://www.TechFak.Uni-Bielefeld.DE/~kurtz/PS/ABO:OHL:KUR:2002.pdf
Generalized String Matching, SIAM Journal on Computing, vol.16, issue.6, pp.1039-1051, 1987. ,
DOI : 10.1137/0216067
New data structures for orthogonal range searching, Proceedings 41st Annual Symposium on Foundations of Computer Science, pp.198-207, 2000. ,
DOI : 10.1109/SFCS.2000.892088
URL : http://www.brics.dk/~gerth/Papers/alcomft-tr-01-35.ps.gz
Text Indexing and Dictionary Matching with One Error, Journal of Algorithms, vol.37, issue.2, pp.309-325, 2000. ,
DOI : 10.1006/jagm.2000.1104
Faster algorithms for string matching with k mismatches, Journal of Algorithms, vol.50, issue.2, pp.257-275, 2004. ,
DOI : 10.1016/S0196-6774(03)00097-X
URL : http://www.cs.biu.ac.il/~amir/Postscripts/hammingj.ps
Fast String Matching with Mismatches, Information and Computation, vol.108, issue.2, pp.187-199, 1994. ,
DOI : 10.1006/inco.1994.1007
A block-sorting loss-less data compression algorithm, SRC Research Report, vol.124, 1994. ,
Disruption of an SF2/ASF-dependent exonic splicing enhancer in SMN2 causes spinal muscular atrophy in the absence of SMN1, Nature Genetics, vol.14, issue.20, pp.377-384, 2002. ,
DOI : 10.1101/gad.189500
Handbook of Exact String Matching Algorithms. Texts in Algorithmics. King's College London, 2004. ,
Self-normalised Distance with Don???t Cares, Lecture Notes in Computer Science, vol.4580, pp.63-70, 2007. ,
DOI : 10.1007/978-3-540-73437-6_9
Dictionary matching and indexing with errors and don't cares, Proceedings of the thirty-sixth annual ACM symposium on Theory of computing , STOC '04, pp.91-100, 2004. ,
DOI : 10.1145/1007352.1007374
Verifying candidate matches in sparse and wildcard matching, Proceedings of the thiry-fourth annual ACM symposium on Theory of computing , STOC '02, pp.592-601, 2002. ,
DOI : 10.1145/509907.509992
URL : http://hariharan-ramesh.com/papers/dontcares.pdf
Algorithms on Strings, 2007. ,
DOI : 10.1017/CBO9780511546853
URL : https://hal.archives-ouvertes.fr/hal-00470109
Finding Patterns in Given Intervals, Fundam. Inform, vol.101, issue.3, pp.173-186, 2010. ,
DOI : 10.1007/978-3-540-74456-6_57
URL : https://hal.archives-ouvertes.fr/hal-00620133
A fast algorithm for string matching with mismatches, Information Processing Letters, vol.55, issue.2, pp.105-110, 1995. ,
DOI : 10.1016/0020-0190(95)00043-C
Optimal suffix tree construction with large alphabets, Proceedings 38th Annual Symposium on Foundations of Computer Science, pp.137-143, 1997. ,
DOI : 10.1109/SFCS.1997.646102
Opportunistic data structures with applications, Proceedings 41st Annual Symposium on Foundations of Computer Science, pp.390-398, 2000. ,
DOI : 10.1109/SFCS.2000.892127
URL : http://butirro.di.unipi.it/FM-index/FM-pages/../../Latex/focs00.ps
An Alphabet-Friendly FM-Index, Lecture Notes in Computer Science, vol.3246, pp.150-160, 2004. ,
DOI : 10.1007/978-3-540-30213-1_23
URL : http://www.mfn.unipmn.it/~manzini/papers/spire04.pdf
String matching and other products, SIAM AMS Proceedings, pp.113-125, 1974. ,
When indexing equals compression, ACM Transactions on Algorithms, vol.2, issue.4, pp.611-639, 2006. ,
DOI : 10.1145/1198513.1198521
Improved string matching with k mismatches, ACM SIGACT News, vol.17, issue.4, pp.52-54, 1986. ,
DOI : 10.1145/8307.8309
Parallel string matching with k mismatches, Theoretical Computer Science, vol.51, issue.3, pp.341-348, 1987. ,
DOI : 10.1016/0304-3975(87)90042-9
URL : https://doi.org/10.1016/0304-3975(87)90042-9
Algorithms on Strings, Trees, and Sequences -Computer Science and Computational Biology, 1997. ,
Fast pattern-matching on indeterminate strings, Journal of Discrete Algorithms, vol.6, issue.1, pp.37-50, 2008. ,
DOI : 10.1016/j.jda.2006.10.003
URL : https://doi.org/10.1016/j.jda.2006.10.003
Indexing Circular Patterns, Lecture Notes in Computer Science, vol.4921, pp.46-57, 2008. ,
DOI : 10.1007/978-3-540-77891-2_5
URL : http://www.dcs.kcl.ac.uk/staff/csi/publications/IR07IndexingCircularPatterns.pdf
Indexing Factors with Gaps, Algorithmica, vol.14, issue.3, pp.60-70, 2009. ,
DOI : 10.1007/3-540-60313-1_153
Faster algorithms for string matching problems: matching the convolution bound, Proceedings 39th Annual Symposium on Foundations of Computer Science (Cat. No.98CB36280), pp.166-173, 1998. ,
DOI : 10.1109/SFCS.1998.743440
URL : http://theory.stanford.edu/~indyk/nl98.ps
Efficient pattern-matching with don't cares, ACM/SIAM, pp.655-656, 2002. ,
Simple Linear Work Suffix Array Construction, J. ACM, vol.53, issue.6, pp.918-936, 2006. ,
DOI : 10.1007/3-540-45061-0_73
Constructing suffix arrays in linear time, Journal of Discrete Algorithms, vol.3, issue.2-4, pp.126-142, 2005. ,
DOI : 10.1016/j.jda.2004.08.019
URL : https://doi.org/10.1016/j.jda.2004.08.019
Fast Pattern Matching in Strings, SIAM Journal on Computing, vol.6, issue.2, pp.323-350, 1977. ,
DOI : 10.1137/0206024
Space efficient linear time construction of suffix arrays, Journal of Discrete Algorithms, vol.3, issue.2-4, pp.143-156, 2005. ,
DOI : 10.1016/j.jda.2004.08.002
Presenilin-1 Mutation L271V Results in Altered Exon 8 Splicing and Alzheimer's Disease with Non-cored Plaques and No Neuritic Dystrophy, Journal of Biological Chemistry, vol.9, issue.9, pp.2786748-6754, 2003. ,
DOI : 10.1038/sj.ejhg.5200423
Space Efficient Indexes for String Matching with Don???t Cares, Lecture Notes in Computer Science, vol.4835, pp.846-857, 2007. ,
DOI : 10.1007/978-3-540-77120-3_73
Efficient string matching with k mismatches, Theoretical Computer Science, vol.43, pp.239-249, 1986. ,
DOI : 10.1016/0304-3975(86)90178-7
URL : https://doi.org/10.1016/0304-3975(86)90178-7
Suffix Arrays: A New Method for On-Line String Searches, SIAM Journal on Computing, vol.22, issue.5, pp.935-948, 1993. ,
DOI : 10.1137/0222058
URL : http://webglimpse.net/pubs/suffix.pdf
A Space-Economical Suffix Tree Construction Algorithm, Journal of the ACM, vol.23, issue.2, pp.262-272, 1976. ,
DOI : 10.1145/321941.321946
Efficient String Matching with Don???t-Care Patterns, Combinatorial ALgorithms on Words, NATO ASI Series, vol.12, pp.11-29, 1985. ,
DOI : 10.1007/978-3-642-82456-2_2
Pattern matching algorithms with don't cares ,
AN ADAPTIVE HYBRID PATTERN-MATCHING ALGORITHM ON INDETERMINATE STRINGS, International Journal of Foundations of Computer Science, vol.20, issue.06, pp.985-1004, 2009. ,
DOI : 10.1145/79173.79184
AN ADAPTIVE HYBRID PATTERN-MATCHING ALGORITHM ON INDETERMINATE STRINGS, Stringology, pp.95-107, 2008. ,
DOI : 10.1145/79173.79184
Succincter Text Indexing with Wildcards, Lecture Notes in Computer Science, vol.39, issue.1, pp.27-40, 2011. ,
DOI : 10.1109/SWAT.1973.13
URL : http://arxiv.org/pdf/1101.5376.pdf
On-line construction of suffix trees, Algorithmica, vol.10, issue.3, pp.249-260, 1995. ,
DOI : 10.1145/321941.321946
URL : http://www.cs.helsinki.fi/u/ukkonen/SuffixT1.ps
Linear pattern matching algorithms, 14th Annual Symposium on Switching and Automata Theory (swat 1973), pp.1-11, 1973. ,
DOI : 10.1109/SWAT.1973.13
URL : http://airelles.i3s.unice.fr/files/Weiner.pdf