Phylogenetic networks, Verhandl. Naturwiss. Vereins Hamburg (NF), vol.34, pp.51-71, 1994. ,
A Framework for Representing Reticulate Evolution, Annals of Combinatorics, vol.8, issue.4, pp.391-408, 2004. ,
DOI : 10.1007/s00026-004-0228-0
URL : http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.127.6384
Hybrids in Real Time, Systematic Biology, vol.55, issue.1, pp.46-56, 2006. ,
DOI : 10.1080/10635150500431197
Neighbor-Net: An Agglomerative Method for the Construction of Phylogenetic Networks, Molecular Biology and Evolution, vol.21, issue.2, pp.255-265, 2003. ,
DOI : 10.1093/molbev/msh018
A distance metric for a class of tree-sibling phylogenetic networks, Bioinformatics, vol.24, issue.13, pp.1481-1488, 2008. ,
DOI : 10.1093/bioinformatics/btn231
Computing the maximum agreement of phylogenetic networks, Theoretical Computer Science, vol.335, issue.1, pp.93-107, 2005. ,
DOI : 10.1016/j.tcs.2004.12.012
Basic phylogenetic combinatorics, 2012. ,
DOI : 10.1017/CBO9781139019767
On encodings of phylogenetic networks of bounded level, Journal of Mathematical Biology, vol.8, issue.3, pp.157-180, 2012. ,
DOI : 10.1007/s00285-011-0456-y
URL : https://hal.archives-ouvertes.fr/hal-00609130
OPTIMAL, EFFICIENT RECONSTRUCTION OF PHYLOGENETIC NETWORKS WITH CONSTRAINED RECOMBINATION, Journal of Bioinformatics and Computational Biology, vol.156, issue.01, pp.173-213, 2004. ,
DOI : 10.1016/S0169-5347(00)02026-7
Reconstructing evolution of sequences subject to recombination using parsimony, Mathematical Biosciences, vol.98, issue.2, pp.185-200, 1990. ,
DOI : 10.1016/0025-5564(90)90123-G
Encoding and Constructing 1-Nested Phylogenetic Networks with Trinets, Algorithmica, vol.8, issue.2???3, pp.714-738, 2013. ,
DOI : 10.1007/s00453-012-9659-x
URL : http://arxiv.org/abs/1110.0728
A Practical Algorithm for Reconstructing Level-1 Phylogenetic Networks, IEEE/ACM Transactions on Computational Biology and Bioinformatics, vol.8, issue.3, pp.607-620, 2011. ,
DOI : 10.1109/TCBB.2010.17
URL : http://arxiv.org/abs/0910.4067
A Survey of Combinatorial Methods for Phylogenetic Networks, Genome Biology and Evolution, vol.3, issue.0, pp.23-35, 2010. ,
DOI : 10.1093/gbe/evq077
Algorithms for Combining Rooted Triplets into a Galled Phylogenetic Network, SIAM Journal on Computing, vol.35, issue.5, pp.1098-1121, 2006. ,
DOI : 10.1137/S0097539704446529
URL : http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.107.4873
Phylogenetic networks in systematic biology (and elsewhere), Res Adv Syst Biol, vol.1, pp.1-48, 2009. ,
All that glisters is not galled, Mathematical Biosciences, vol.221, issue.1, pp.54-59, 2009. ,
DOI : 10.1016/j.mbs.2009.06.007
Phylogenetics Cladistic representation of reticulate evolution, Oxford Sneath P Syst Zool, vol.24, issue.3, pp.360-368, 1975. ,
The complexity of reconstructing trees from qualitative characters and subtrees, Journal of Classification, vol.2, issue.2, pp.91-116, 1992. ,
DOI : 10.1007/BF02618470
Constructing Level-2 Phylogenetic Networks from Triplets, IEEE/ACM Transactions on Computational Biology and Bioinformatics, vol.6, issue.4, pp.667-681, 2009. ,
DOI : 10.1109/TCBB.2009.22
Constructing the Simplest Possible Phylogenetic Network from Triplets, Algorithmica, vol.8, issue.1, pp.207-235, 2011. ,
DOI : 10.1007/s00453-009-9333-0
When two trees go to war, Journal of Theoretical Biology, vol.269, issue.1, pp.245-255, 2011. ,
DOI : 10.1016/j.jtbi.2010.10.032
URL : https://hal.archives-ouvertes.fr/hal-00653683
Trinets encode tree-child and level-2 phylogenetic networks, Journal of Mathematical Biology, vol.8, issue.3, pp.1707-1729, 2014. ,
DOI : 10.1007/s00285-013-0683-5
Locating a tree in a phylogenetic network, Information Processing Letters, vol.110, issue.23, pp.1037-1043, 2010. ,
DOI : 10.1016/j.ipl.2010.07.027
Perfect phylogenetic networks with recombination, Proceedings of the 2001 ACM symposium on Applied computing , SAC '01, pp.69-78, 2001. ,
DOI : 10.1145/372202.372271
URL : http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.407.9308
Properties of Normal Phylogenetic Networks, Bulletin of Mathematical Biology, vol.252, issue.2, pp.340-358, 2010. ,
DOI : 10.1007/s11538-009-9449-z