A. Bergeron and J. Stoye, On the similarity of sets of permutations and its applications to genome comparison, Proceedings of COCOON 03, pp.68-79, 2003.

M. Blanchette, T. Kunisawa, and D. Sankoff, Gene Order Breakpoint Evidence in Animal Mitochondrial Phylogeny, Journal of Molecular Evolution, vol.49, issue.2, pp.193-203, 1999.
DOI : 10.1007/PL00006542

G. Blin, C. Chauve, and G. Fertin, The breakpoints distance for signed sequences, Actes de CompBioNets, pp.3-16, 2004.

G. Bourque and P. A. Pevzner, Genome-scale evolution: Reconstructing gene orders in the ancestral species, Genome Res, vol.12, issue.1, pp.26-36, 2002.

G. Bourque, P. A. Pevzner, and G. Tesler, Reconstructing the Genomic Architecture of Ancestral Mammals: Lessons From Human, Mouse, and Rat Genomes, Genome Research, vol.14, issue.4, pp.507-516, 2004.
DOI : 10.1101/gr.1975204

D. Bryant, The Complexity of Calculating Exemplar Distances, Comparative Genomics: Empirical and Analytical Approaches to Gene Order Dynamics, Map Alignment, and the Evolution of Gene Families, pp.207-212, 2000.
DOI : 10.1007/978-94-011-4309-7_19

M. Garey and D. Johnson, Computers and Intractability: A Guide to the Theory of NP-Completeness, 1979.

B. M. Moret, A. C. Siepel, J. Tang, and T. Liu, Inversion Medians Outperform Breakpoint Medians in Phylogeny Reconstruction from Gene-Order Data, WABI 2002, pp.521-536, 2002.
DOI : 10.1007/3-540-45784-4_40

D. Sankoff, Genome rearrangement with gene families, Bioinformatics, vol.15, issue.11, pp.909-917, 1999.
DOI : 10.1093/bioinformatics/15.11.909

K. M. Swenson, M. Marron, J. Earnest-deyoung, and B. M. Moret, Approximating the true evolutionary distance between two genomes, Journal of Experimental Algorithmics, vol.12, 2004.
DOI : 10.1145/1227161.1402297
URL : http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.154.556