Function Matching: Algorithms, Applications, and a Lower Bound, Proc. of ICALP 03, pp.929-942, 2003. ,
DOI : 10.1007/3-540-45061-0_72
Parameterized Pattern Matching: Algorithms and Applications, Journal of Computer and System Sciences, vol.52, issue.1, pp.28-42, 1996. ,
DOI : 10.1006/jcss.1996.0003
Parameterized Duplication in Strings: Algorithms and an Application to Software Maintenance, SIAM Journal on Computing, vol.26, issue.5, pp.1343-1362, 1997. ,
DOI : 10.1137/S0097539793246707
Approaches to the Automatic Discovery of Patterns in Biosequences, Journal of Computational Biology, vol.5, issue.2, pp.277-304, 1997. ,
DOI : 10.1089/cmb.1998.5.279
Finding maximal pairs with bounded gaps, J. of Discrete Algorithms, vol.1, issue.1, pp.1-27, 2000. ,
Compact polymers, Macromolecules, vol.22, issue.12, pp.4559-4573, 1989. ,
DOI : 10.1021/ma00202a031
Introduction to Algorithms ? Second Edition, 1998. ,
Longest repeats with a block of don't cares, Proc. of Latin 04, 2004. ,
URL : https://hal.archives-ouvertes.fr/hal-00619567
Algorithms on Strings, Trees and Sequences: Computer Science and Computational Biology, 1997. ,
DOI : 10.1017/CBO9780511574931
Fast Algorithms for Finding Nearest Common Ancestors, SIAM Journal on Computing, vol.13, issue.2, pp.338-355, 1984. ,
DOI : 10.1137/0213024
Multiple-alphabet amino acid sequence comparisons of the immunoglobulin kappa-chain constant domain., Proc. Natl. Acad. Sci. USA, pp.8597-8601, 1985. ,
DOI : 10.1073/pnas.82.24.8597
Finding repeats with fixed gap, Proceedings Seventh International Symposium on String Processing and Information Retrieval. SPIRE 2000, pp.162-168, 2002. ,
DOI : 10.1109/SPIRE.2000.878192
URL : https://hal.archives-ouvertes.fr/inria-00107855
Reduction of protein sequence complexity by residue grouping, Protein Engineering Design and Selection, vol.16, issue.5, pp.323-330, 2003. ,
DOI : 10.1093/protein/gzg044
Simplified amino acid alphabets based on deviation of conditional probability from random background, Physical Review E, vol.66, issue.2, pp.1-9, 2002. ,
DOI : 10.1103/PhysRevE.66.021906
Applied Combinatorics on Words ,
DOI : 10.1017/CBO9781107341005
URL : https://hal.archives-ouvertes.fr/hal-00620607
Combinatorics on Words, 1997. ,
DOI : 10.1017/CBO9780511566097
URL : https://hal.archives-ouvertes.fr/hal-00620607
Algebraic Combinatorics on Words, 2002. ,
DOI : 10.1017/CBO9781107326019
URL : https://hal.archives-ouvertes.fr/hal-00620608
A Space-Economical Suffix Tree Construction Algorithm, Journal of the ACM, vol.23, issue.2, pp.262-272, 1976. ,
DOI : 10.1145/321941.321946
Simplified amino acid alphabets for protein fold recognition and implications for folding, Protein Engineering Design and Selection, vol.13, issue.3, pp.149-152, 2000. ,
DOI : 10.1093/protein/13.3.149
On Finding Lowest Common Ancestors: Simplification and Parallelization, SIAM Journal on Computing, vol.17, issue.6, pp.1253-1262, 1988. ,
DOI : 10.1137/0217079
Viscose: Visualisation and comparison of consensus sequences, Bioinformatics ,
A computational approach to simplifying the protein folding alphabet, Nat. Struct. Biol, vol.11, pp.1033-1038, 1999. ,