Kankanet: An artificial neural network-based object detection smartphone application and mobile microscope as a point-of-care diagnostic aid for soil-transmitted helminthiases

Ariel Yang (1) , Nahid Bakhtari (1) , Liana Langdon-Embry (1) , Emile Redwood (1) , Simon Grandjean Lapierre (1, 2, 3) , Patricia Rakotomanga (4) , Armand Rafalimanantsoa (4) , Juan de Dios Santos (5) , Inès Vigan‑womas (6) , Astrid M. Knoblauch (1, 3, 7) , Luis A. Marcos (1)

1 SBU - Stony Brook University [SUNY]
2 CR CHUM - Centre de Recherche du Centre Hospitalier de l’Université de Montréal
3 IPM - Unité des Mycobactéries [Antananarivo, Madagascar]
4 IPM - Unité des Helminthiases [Antananarivo, Madagascar]
5 Uppsala University
6 IPM - Unité d'immunologie des maladies infectieuses [Antananarivo, Madagascar]
7 Swiss Tropical and Public Health Institute [Basel]

Background Endemic areas for soil-transmitted helminthiases often lack the tools and trained personnel necessary for point-of-care diagnosis. This study pilots the use of smartphone microscopy and an artificial neural network-based (ANN) object detection application named Kankanet to address those two needs. Methodology/Principal findings A smartphone was equipped with a USB Video Class (UVC) microscope attachment and Kankanet, which was trained to recognize eggs of Ascaris lumbricoides, Trichuris trichiura, and hookworm using a dataset of 2,078 images. It was evaluated for interpretive accuracy based on 185 new images. Fecal samples were processed using Kato-Katz (KK), spontaneous sedimentation technique in tube (SSTT), and Merthiolate-Iodine-Formaldehyde (MIF) techniques. UVC imaging and ANN interpretation of these slides was compared to parasitologist interpretation of standard microscopy.Relative to a gold standard defined as any positive result from parasitologist reading of KK, SSTT, and MIF preparations through standard microscopy, parasitologists reading UVC imaging of SSTT achieved a comparable sensitivity (82.9%) and specificity (97.1%) in A. lumbricoides to standard KK interpretation (97.0% sensitivity, 96.0% specificity). The UVC could not accurately image T. trichiura or hookworm. Though Kankanet interpretation was not quite as sensitive as parasitologist interpretation, it still achieved high sensitivity for A. lumbricoides and hookworm (69.6% and 71.4%, respectively). Kankanet showed high sensitivity for T. trichiura in microscope images (100.0%), but low in UVC images (50.0%). Conclusions/Significance The UVC achieved comparable sensitivity to standard microscopy with only A. lumbricoides. With further improvement of image resolution and magnification, UVC shows promise as a point-of-care imaging tool. In addition to smartphone microscopy, ANN-based object detection can be developed as a diagnostic aid. Though trained with a limited dataset, Kankanet accurately interprets both standard microscope and low-quality UVC images. Kankanet may achieve sensitivity comparable to parasitologists with continued expansion of the image database and improvement of machine learning technology.

Domaines: Microbiologie et Parasitologie; Immunologie; Biologie cellulaire; Biologie moléculaire; Santé publique et épidémiologie

Ariel Yang, Nahid Bakhtari, Liana Langdon-Embry, Emile Redwood, Simon Grandjean Lapierre, et al.. Kankanet: An artificial neural network-based object detection smartphone application and mobile microscope as a point-of-care diagnostic aid for soil-transmitted helminthiases. PLoS Neglected Tropical Diseases, 2019, 13 (8), pp.e0007577. ⟨10.1371/journal.pntd.0007577⟩. ⟨pasteur-02937038⟩